Software Projects
Graphical User Tools
- TexMol: Molecular visualization and computation
- VolumeRover: Scalable Image Processing and Visualization Tool
- VolRoverN: Geometric and electrophysiological neuronal simulation and visualization package
- LBIE: Level Set Boundary-Interior-Exterior Meshing Tool
- Prism: Geometric modeling using algebraic patches
- GANITH: Algebraic geometry toolkit
Software Libraries and Command-Line Utilities
- MolSurf: Molecular surface generation and manipulation
- MolEnergy: Molecular energetics computation
- DPG: Dynamic packing grids
- SSEP: Secondary structure elucidation package
- Pocket/Tunnel: Protein pocket/tunnel extractor
- QHM: Quality Quadrilateral/Hexahedral Mesh Generator
- QTM: Quality Triangular/Tetrahedral Mesh Generator
- QMDM: Quality Multi-Domain Meshing with Gap
- QMDMNG: Quality Multi-Domain Meshing with No Gap
- GPU Renderer: Surface/Volume Rendering Packages
- Shastra: X11 Based Scientific Toolkits
- Tracing/Tiling/Tetra: Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections
- PFCorr: Polar Fourier Correlation
- PF2Fit: Polar Fast Fourier Rigid-body Fitting
- PF3Fit: Polar Fast Fourier Flexible Fitting
- PMEOPA: Parallel Molecular Energetics
- PGBFOPA: Parallel Generalized Born Force
- TVCT: Time-varying Contour Trees