Software Projects
Graphical User Tools
- TexMol: Molecular visualization and computation
- VolumeRover: Scalable Image Processing and Visualization Tool
- VolRoverN: Geometric and electrophysiological neuronal simulation and visualization package
- LBIE: Level Set Boundary-Interior-Exterior Meshing Tool
- Prism (opens in a new tab): Geometric modeling using algebraic patches
- GANITH: Algebraic geometry toolkit
Software Libraries and Command-Line Utilities
- MolSurf: Molecular surface generation and manipulation
- MolEnergy: Molecular energetics computation
- DPG: Dynamic packing grids
- SSEP: Secondary structure elucidation package
- Pocket/Tunnel (opens in a new tab): Protein pocket/tunnel extractor
- QHM (opens in a new tab): Quality Quadrilateral/Hexahedral Mesh Generator
- QTM (opens in a new tab): Quality Triangular/Tetrahedral Mesh Generator
- QMDM: Quality Multi-Domain Meshing with Gap
- QMDMNG: Quality Multi-Domain Meshing with No Gap
- GPU Renderer (opens in a new tab): Surface/Volume Rendering Packages
- Shastra: X11 Based Scientific Toolkits
- Tracing/Tiling/Tetra: Arbitrary Topology Shape Reconstruction Library from Planar Cross Sections
- PFCorr: Polar Fourier Correlation
- PF2Fit: Polar Fast Fourier Rigid-body Fitting
- PF3Fit: Polar Fast Fourier Flexible Fitting
- PMEOPA: Parallel Molecular Energetics
- PGBFOPA: Parallel Generalized Born Force
- TVCT: Time-varying Contour Trees
Server Based Codes
- F2Dock: Protein docking software
- TRLIB (opens in a new tab): Texture-based Rendering Library
- ParIso: Fast Parallel Isosurface Rendering Library
- MTD: Server-Client based Multi-Tiled Display Library
- PVRC: Parallel Volume Ray Casting Library